5488 CAP_ED
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5488 chr_5 CAP_ED 1347935 1350867 - CAP_ED

Synonyms

NCBI ID Ensembl Genomes exon ID
7450095 Thaps5488.2, Thaps5488.1, Thaps5488.4, Thaps5488.3, Thaps5488.5

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0489

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0097
 0.39

Most Highly Correlated Transcripts

262692

0.7202

bd1062

(bd1062) NA
0.7115

bd731

(bd731) NA
0.7106

bd909

(bd909) NA
0.6913

bd687

(bd687) NA
0.6849

12090

hypothetical protein
0.6842

bd1221

(bd1221) recQ_fam
0.6788

6571

hypothetical protein
0.6667

bd1464

(bd1464) CAP_ED
0.6656

bd875

(bd875) NA
0.6609

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 73.129 4.27E-15 689 - 778 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 73.129 4.27E-15 689 - 778 superfamily 260155
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 69.8841 1.63E-14 202 - 271 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 69.8841 1.63E-14 202 - 271 superfamily 238008

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 215541 Cre10.g450100.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 GO:0005216 GO:0006811 GO:0016020 GO:0000287 GO:0008152 GO:0016462 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0000287

magnesium ion binding

Details: 
Interacting selectively and non-covalently with magnesium (Mg) ions.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

Add comment

Log in to post comments