bd1221 (bd1221) recQ_fam
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1221 bd_20x5 (bd1221) recQ_fam 24739 26395 + recQ_fam

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Most Highly Correlated Transcripts

268080

NTF2_like superfamily
0.939

5295

hypothetical protein
0.9354

2954

hypothetical protein
0.9306

9605

hypothetical protein
0.9285

34771

(MTF1) PLN02285
0.9142

24812

MviM
0.909

21863

Glyco_transf_15 superfamily
0.9089

19991

(TRX3) TRX_family
0.9088

20571

Membrane-FADS-like superfamily
0.9069

6805

PRK07206
0.9042

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 79.5892 1.10E-17 277 - 379 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 79.5892 1.10E-17 277 - 379 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 74.296 7.91E-16 65 - 212 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 74.296 7.91E-16 65 - 212 superfamily 266587
recQ_fam ATP-dependent DNA helicase, RecQ family; All proteins in this family for which functions are known... - 359.084 2.04E-118 24 - 475 multi-dom 129701

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_2089 PHATR_2089 203792 179522 418276 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

Not available -

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