5643 PC4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5643 chr_5 PC4 1710431 1711162 + PC4

Synonyms

NCBI ID Ensembl Genomes exon ID
7448192 Thaps5643.2, Thaps5643.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0124

Most Highly Correlated Transcripts

23170

hypothetical protein
0.9078

2862

HA
0.9056

1818

hypothetical protein
0.9026

36988

UBQ superfamily
0.8999

31598

cyclophilin superfamily
0.8992

6960

Methyltransf_31
0.8978

35328

DPCK
0.8966

17582

HAD-SF-IIA-hyp3
0.896

13448

Sec1
0.8941

15161

Bromodomain superfamily
0.8937

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PC4 superfamily Transcriptional Coactivator p15 (PC4); p15 has a bipartite structure composed of an amino-terminal... - 87.5984 8.57E-23 132 - 185 superfamily 251170
PC4 superfamily Transcriptional Coactivator p15 (PC4); p15 has a bipartite structure composed of an amino-terminal... - 87.5984 8.57E-23 132 - 185 superfamily 251170

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_37144 PHATRDRAFT_37144 269394 204403 Not available Not available AT5G09250.1 297366

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003713 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003713

transcription coactivator activity

Details: 
Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind DNA, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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