6370 SpoU_methylase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6370 chr_6 SpoU_methylase superfamily 1414591 1416411 + SpoU_methylase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7453294 Thaps6370.3, Thaps6370.2, Thaps6370.4, Thaps6370.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0217
 0.33

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.866

39516

PLN02951
0.8644

bd524

(bd524) NA
0.8599

11841

hypothetical protein
0.858

bd1877

(bd1877) NA
0.8571

4067

hypothetical protein
0.8546

22197

Aldo_ket_red
0.8499

bd1946

(bd1946) NA
0.8424

20827

hypothetical protein
0.8352

bd1439

(bd1439) ycf35
0.8323

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 77.1644 3.39E-17 252 - 367 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 43375 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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