6564 TspO_MBR superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6564 chr_6 TspO_MBR superfamily 1903244 1904206 + TspO_MBR superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446550 Thaps6564.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0029

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0250
 0.30

Most Highly Correlated Transcripts

bd1645

(bd1645) tpt
0.9683

bd1306

(bd1306) NA
0.9508

bd1820

(bd1820) Fasciclin
0.9487

bd1765

(bd1765) NA
0.9482

bd208

(bd208) DUF3529
0.9385

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9328

bd1380

(bd1380) ycf39
0.9298

bd1403

(bd1403) NA
0.9268

bd218

(bd218) Chloroa_b-bind superfamily
0.9259

bd718

(bd718) PRK10387
0.921

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TspO_MBR superfamily TspO/MBR family; Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts... - 61.9834 6.25E-12 169 - 286 superfamily 260907

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44370 PHATRDRAFT_44370 193335 65985 64460 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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