7474 PITHThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7474	chr_8	PITH	322916	323671	+	PITH

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445549	Thaps7474.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0070

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0169	0.34	13 7.7

Most Highly Correlated Transcripts

21300 NADB_Rossmann superfamily 0.8827	bd1857 (bd1857) DnaJ 0.8791	3878 (PPI2) cyclophilin_ABH_like 0.8659	31851 BKR_SDR_c 0.8652	21042 hypothetical protein 0.8625	9512 PTZ00168 0.8582
1155 hypothetical protein 0.8578	5601 hypothetical protein 0.8546	bd1765 (bd1765) NA 0.8545	bd1820 (bd1820) Fasciclin 0.8531

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PITH superfamily		PITH domain; This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a...	-	134.252	5.88E-39	25 - 215	superfamily	253614
PITH superfamily		PITH domain; This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a...	-	134.252	5.88E-39	25 - 215	superfamily	253614

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14294	PHATRDRAFT_14294	232595	188011	423880	Cre02.g110450.t1.2	AT2G25950.1	487097

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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