7582 CHDThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7582	chr_8	CHD	600553	603527	-	CHD

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450172	Thaps7582.1, Thaps7582.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0410

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0073	0.47	0.000041 8.2

Most Highly Correlated Transcripts

2154 hypothetical protein 0.9016	10487 hypothetical protein 0.8993	1249 hypothetical protein 0.8968	25576 Galactosyl_T superfamily 0.8928	21090 hypothetical protein 0.8828	3676 hypothetical protein 0.879
6240 hypothetical protein 0.8776	5871 Methyltransf_21 superfamily 0.8755	1244 hypothetical protein 0.8736	6630 hypothetical protein 0.8734

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CHD		cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also...	cl11967	91.4866	7.47E-21	519 - 685	specific	143636
Nucleotidyl_cyc_III superfamily		Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group...	-	91.4866	7.47E-21	519 - 685	superfamily	264492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre09.g402589.t1.1	Not available	483300

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 -

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