8228 Reprolysin_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8228 chr_9 Reprolysin_3 1177461 1180388 + Reprolysin_3

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0332

Most Highly Correlated Transcripts

bd1692

(bd1692) NA
0.7654

1643

LPLAT superfamily
0.753

bd938

(bd938) PBP2_NikA_DppA_OppA_like superfamily
0.7516

21090

hypothetical protein
0.7449

bd1890

(bd1890) NA
0.7437

bd877

(bd877) NA
0.7411

bd409

(bd409) Snf7 superfamily
0.7344

bd1948

(bd1948) NA
0.7245

bd1877

(bd1877) NA
0.7195

bd1891

(bd1891) COG3899
0.7145

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the... cl00064 83.1427 1.46E-18 366 - 496 specific 257898
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 83.1427 1.46E-18 366 - 496 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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