8289 RVT_2 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8289	chr_10	RVT_2 superfamily	215900	217295	+	RVT_2 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451048	Thaps8289.2, Thaps8289.1, Thaps8289.3, Thaps8289.5, Thaps8289.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0340

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0072	0.37	0.000000000000001 0.0000000000046

Most Highly Correlated Transcripts

bd816 (bd816) NA 0.8943	bd650 (bd650) NA 0.878	4108 hypothetical protein 0.8608	bd771 (bd771) NA 0.851	bd828 (bd828) NA 0.8508	7351 hypothetical protein 0.8253
8874 hypothetical protein 0.8114	bd811 (bd811) NA 0.809	bd810 (bd810) NA 0.8047	7603 hypothetical protein 0.7957

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RVT_2 superfamily		Reverse transcriptase (RNA-dependent DNA polymerase); A reverse transcriptase gene is usually...	-	64.0147	2.66E-12	6 - 101	superfamily	254387

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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