8680 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8680 chr_11a PseudoU_synth_RluCD_like 196350 198388 - PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7443268 Thaps8680.2, Thaps8680.4, Thaps8680.3, Thaps8680.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0243

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

23199

WD40 superfamily
0.8376

bd686

(bd686) Glyco_transf_22 superfamily
0.8112

bd923

(bd923) NA
0.805

262858

(IKI3) IKI3
0.805

28816

(RPC1) PRK08566
0.8032

263650

NAD_binding_8 superfamily
0.8021

31764

DUF21
0.7993

25640

hypothetical protein
0.7974

23533

hypothetical protein
0.7965

6606

obgE
0.7943

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 122.061 1.73E-32 283 - 442 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 122.061 1.73E-32 283 - 442 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

Add comment

Log in to post comments