8820 CHD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8820 chr_11a CHD 617603 619789 + CHD

Synonyms

NCBI ID Ensembl Genomes exon ID
7444474 Thaps8820.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0311

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0002
 0.43

Most Highly Correlated Transcripts

bd1756

(bd1756) NA
0.9349

bd1839

(bd1839) NA
0.9135

bd1840

(bd1840) NA
0.9064

bd1946

(bd1946) NA
0.8792

bd1835

(bd1835) NA
0.8489

24390

hypothetical protein
0.8319

bd1790

(bd1790) NA
0.8178

bd933

(bd933) NA
0.8121

bd453

(bd453) Mito_carr
0.8022

38011

PKc_like superfamily
0.7926

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CHD cyclase homology domain; Catalytic domains of the mononucleotidyl cyclases (MNC's), also... cl11967 165.445 2.19E-47 547 - 725 specific 143636
Nucleotidyl_cyc_III superfamily Class III nucleotidyl cyclases; Class III nucleotidyl cyclases are the largest, most diverse group... - 165.445 2.19E-47 547 - 725 superfamily 264492
CYCc Adenylyl- / guanylyl cyclase, catalytic domain; Present in two copies in mammalian adenylyl... - 165.508 3.83E-47 530 - 705 multi-dom 214485

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 GO:0009190 GO:0016849 GO:0004016 GO:0008294 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

GO:0009190

cyclic nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue.
GO Category: 
BP

GO:0016849

phosphorus-oxygen lyase activity

Details: 
Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.
GO Category: 
MF

GO:0004016

adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate.
GO Category: 
MF

GO:0008294

calcium- and calmodulin-responsive adenylate cyclase activity

Details: 
Catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate, stimulated by calcium-bound calmodulin.
GO Category: 
MF

Add comment

Log in to post comments