885 DUF544 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
885	chr_1	DUF544 superfamily	73044	74579	+	DUF544 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445487	Thaps885.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0404

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0126	0.34	1.5 22000

Most Highly Correlated Transcripts

1275 hypothetical protein 0.9041	8510 hypothetical protein 0.8901	21525 hypothetical protein 0.8881	3493 hypothetical protein 0.8875	3260 hypothetical protein 0.8874	9364 hypothetical protein 0.883
21238 (ALD3) ALDH_F3-13-14_CALDH-like 0.8819	262157 E1_like_apg7 0.8786	21308 RING 0.8748	21827 hypothetical protein 0.8733

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF544 superfamily		Protein of unknown function (DUF544); Eukaryotic protein of unknown function.	-	85.142	8.86E-20	52 - 123	superfamily	113205

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_46063	PHATRDRAFT_46063	232641	244652	437398	Cre06.g304850.t1.1	AT4G11860.1	353650

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments