9442 PTZ00146
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9442 chr_13 PTZ00146 439194 440759 - PTZ00146

Synonyms

NCBI ID Ensembl Genomes exon ID
7445756 Thaps9442.3, Thaps9442.4, Thaps9442.2, Thaps9442.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0101
 0.32

Most Highly Correlated Transcripts

20469

PLN00032
0.8491

22985

WD40 superfamily
0.8473

38006

FKBP_C
0.8458

26492

PRK05385
0.8457

bd174

(bd174) Tim17 superfamily
0.8377

39924

(TopoII_1) gyrB
0.8374

23336

SRP40_C superfamily
0.8353

31516

SIK1
0.8275

bd1828

(bd1828) NA
0.8254

22635

SIK1
0.824

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PTZ00146 fibrillarin; Provisional cl17173 465.362 1.19E-165 56 - 301 specific 240291
AdoMet_MTases superfamily S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases... - 465.362 1.19E-165 56 - 301 superfamily 266528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48920 PHATRDRAFT_48920 267598 233552 350745 Cre02.g077300.t1.2 AT5G52470.1 481376

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0003723 GO:0005634 GO:0006364 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006364

rRNA processing

Details: 
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO Category: 
BP

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