9650 hypothetical protein
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9650 chr_13 hypothetical protein 1022449 1024426 - hypothetical protein

Synonyms

NCBI ID Ensembl Genomes exon ID
7450806 Thaps9650.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0197

Most Highly Correlated Transcripts

8551

DDHD superfamily
0.8905

1674

hypothetical protein
0.8895

6086

hypothetical protein
0.8861

24693

hypothetical protein
0.8828

4510

hypothetical protein
0.881

263509

mutl
0.8809

6378

hypothetical protein
0.8794

25342

hypothetical protein
0.8758

4333

hypothetical protein
0.8743

21778

hypothetical protein
0.8725

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 249471 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006284 GO:0004844 GO:0016799 GO:0017065 GO:0019104 -

GO:0006284

base-excision repair

Details: 
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO Category: 
BP

GO:0004844

uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
GO Category: 
MF

GO:0016799

hydrolase activity, hydrolyzing N-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any N-glycosyl bond.
GO Category: 
MF

GO:0017065

single-strand selective uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA.
GO Category: 
MF

GO:0019104

DNA N-glycosylase activity

Details: 
Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.
GO Category: 
MF

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