974 hot_dog superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
974 chr_1 hot_dog superfamily 288094 289327 - hot_dog superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451497 Thaps974.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0070

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0169
 0.34

Most Highly Correlated Transcripts

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9222

bd1820

(bd1820) Fasciclin
0.9182

bd1645

(bd1645) tpt
0.901

bd1306

(bd1306) NA
0.8986

32321

TRX_family
0.8936

6802

hypothetical protein
0.8913

bd218

(bd218) Chloroa_b-bind superfamily
0.8913

bd1658

(bd1658) NA
0.8875

bd1863

(bd1863) NA
0.8839

1091

hypothetical protein
0.882

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
hot_dog superfamily The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier... - 76.4891 5.80E-17 264 - 377 superfamily 260469

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43519 PHATRDRAFT_43519 230060 296 Not available Cre06.g308100.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004197 GO:0006508 GO:0008152 GO:0016491 -

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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