bd1387 (bd1387) psbEThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1387	bd_26x41	(bd1387) psbE	4767	5021	+	psbE

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0058

Most Highly Correlated Transcripts

ThpsCp065 (psbE) photosystem II protein V 1	bd1304 (bd1304) Ycf4 0.9962	ThpsCp066 (ycf4) photosystem I assembly protein Ycf4 0.9962	ThpsCp001 (psaA) photosystem I P700 chlorophyll a apoprotein A1 0.9946	ThpsCt017 (trnG(ucc)) 0.993	ThpsCp064 (psbF) photosystem II protein VI 0.9899
ThpsCp063 (psbL) photosystem II protein L 0.9875	ThpsCp062 (psbJ) photosystem II protein J 0.9845	bd2073 (bd2073) psbB 0.9806	ThpsCp018 (psbB) photosystem II 47 kDa protein 0.9806

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cytochrom_B559a superfamily		Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion...	-	89.2343	5.51E-25	43 - 82	superfamily	144025
Cytochrom_B559a superfamily		Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit; This family is the lumenal portion...	-	89.2343	5.51E-25	43 - 82	superfamily	144025
psbE		photosystem II protein V	-	169.912	3.81E-56	2 - 84	multi-dom	177004

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	298339	Not available	Not available	ATCG00580.1	Not available

KEGG

KEGG description	KEGG Pathway
Metabolic pathways	map01100

GO Terms

Not available -

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