bd1441 (bd1441) ccsAThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1441	bd_27x41	(bd1441) ccsA	1745	2722	-	ccsA

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0069

Most Highly Correlated Transcripts

ThpsCp088 (ccsA) cytochrome c biogenesis protein 1	ThpsCp128 (ccsA) cytochrome c biogenesis protein 1	ThpsCp051 (psbK) photosystem II protein K 0.9715	bd1342 (bd1342) psaL 0.9682	ThpsCp068 (psaL) photosystem I subunit XI 0.9682	bd1350 (bd1350) psaF 0.9653
ThpsCp062 (psbJ) photosystem II protein J 0.9631	ThpsCp073 (psaF) photosystem I subunit III 0.9621	ThpsCp064 (psbF) photosystem II protein VI 0.9593	ThpsCp063 (psbL) photosystem II protein L 0.9572

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ccsA		cytochrome c biogenesis protein	cl00504	457.771	6.08E-162	1 - 325	specific	214346
Cytochrom_C_asm superfamily		Cytochrome C assembly protein; This family consists of various proteins involved in cytochrome c...	-	457.771	6.08E-162	1 - 325	superfamily	260465

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210827	Not available	Not available	ATCG01040.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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