bd529 (bd529) SNF2_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd529 bd_6x46 (bd529) SNF2_N 22333 24815 - SNF2_N

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0090

Most Highly Correlated Transcripts

2132

hypothetical protein
0.9711

33513

CYCLIN
0.9662

2085

hypothetical protein
0.9656

262514

(HAL3) Flavoprotein superfamily
0.9655

2728

hypothetical protein
0.9617

2442

hypothetical protein
0.9606

34975

MCM
0.9591

5400

Lactamase_B superfamily
0.9569

262526

MCM
0.9564

11091

PKc_like superfamily
0.9552

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 99.6196 1.41E-24 381 - 516 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 99.6196 1.41E-24 381 - 516 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 78.9184 3.19E-17 32 - 173 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 78.9184 3.19E-17 32 - 173 superfamily 266587
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 206.369 2.95E-61 13 - 317 multi-dom 249654

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17728 PHATRDRAFT_17728 208366 249845 241187 Cre02.g087600.t1.1 AT2G02090.1 560281

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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