bd651 (bd651) HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd651 bd_6x46 (bd651) HMGB-UBF_HMG-box 1388 2644 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0252

Most Highly Correlated Transcripts

8164

hypothetical protein
0.9196

261748

COG0523
0.8806

261176

Hydrolase_4 superfamily
0.8613

4701

hypothetical protein
0.8585

4590

hypothetical protein
0.8479

ThpsCp100

(ycf88) hypothetical protein
0.8479

20065

(Tp_aureochrome3) regulator [Rayko]
0.8429

269452

hypothetical protein
0.8423

11869

hypothetical protein
0.8404

2235

DnaJ
0.8387

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 63.0305 1.02E-12 83 - 167 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 63.0305 1.02E-12 83 - 167 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 241879 128473 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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