PHATRDRAFT_10209 copg2 protein (SEC21)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10209 chr_3 copg2 protein (SEC21) 456549 459374 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0182

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0057
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 37.294 0.00262246 274 - 375 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 37.294 0.00262246 274 - 375 superfamily 237987
COP-gamma_platf superfamily Coatomer gamma subunit appendage platform subdomain; COPI-coated vesicles function in retrograde... - 161.194 1.49E-45 647 - 791 superfamily 255017
COP-gamma_platf superfamily Coatomer gamma subunit appendage platform subdomain; COPI-coated vesicles function in retrograde... - 161.194 1.49E-45 647 - 791 superfamily 255017
SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] - 508.77 1.81E-165 9 - 905 multi-dom 227565

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269663 Not available 213035 70416 454160 Cre06.g310750.t1.2 AT4G34450.1 537097

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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