PHATRDRAFT_14032 dead deah box (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_14032 chr_13 dead deah box (DEADc) 512673 514073 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0226
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 266.658 8.99E-87 1 - 204 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 266.658 8.99E-87 1 - 204 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 118.88 4.36E-32 249 - 349 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 118.88 4.36E-32 249 - 349 superfamily 238034
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 165.358 5.88E-48 14 - 210 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
13578 Not available 148008 66014 454151 Cre10.g420900.t1.2 AT4G16630.1 527947

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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