PHATRDRAFT_14457 mgc107891 protein (rpa1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_14457 chr_15 mgc107891 protein (rpa1) 631178 633225 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0132

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0105
 0.29

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (... cl09930 152.015 8.22E-44 164 - 265 specific 239920
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 103.431 2.55E-26 4 - 89 superfamily 263924
RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding... cl09930 133.202 3.20E-36 426 - 605 specific 239922
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 103.431 2.55E-26 4 - 89 superfamily 263924
RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (... cl09930 114.604 3.19E-30 294 - 393 specific 239921
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 103.431 2.55E-26 4 - 89 superfamily 263924
RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also... cl09930 103.431 2.55E-26 4 - 89 specific 239923
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 103.431 2.55E-26 4 - 89 superfamily 263924
rpa1 replication factor-a protein 1 (rpa1); All proteins in this family for which functions are known... - 473.833 1.19E-159 12 - 605 multi-dom 233055

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263415 Not available 211019 287183 469065 Cre17.g718850.t1.1 AT2G06510.1 556228

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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