263415 rpa1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263415 chr_8 rpa1 787325 789395 - rpa1

Synonyms

NCBI ID Ensembl Genomes exon ID
7449821 Thaps263415.3, Thaps263415.4, Thaps263415.2, Thaps263415.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

bd1161

(bd1161) NA
0.9103

bd718

(bd718) PRK10387
0.9094

bd439

(bd439) POLBc_alpha
0.8952

bd789

(bd789) ABC_ATPase superfamily
0.8929

bd624

(bd624) Glyco_transf_34 superfamily
0.8861

bd1893

(bd1893) NA
0.8853

37328

PriL_PriS_Eukaryotic
0.86

7942

hypothetical protein
0.855

bd634

(bd634) NA
0.8527

13647

(TMS1) PTZ00164
0.8484

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (... cl09930 152.015 7.07E-44 159 - 262 specific 239920
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 93.416 1.11E-22 7 - 102 superfamily 263924
RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding... cl09930 149.381 3.96E-42 420 - 588 specific 239922
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 93.416 1.11E-22 7 - 102 superfamily 263924
RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (... cl09930 99.5809 7.08E-25 290 - 387 specific 239921
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 93.416 1.11E-22 7 - 102 superfamily 263924
RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also... cl09930 93.416 1.11E-22 7 - 102 specific 239923
RPA_2b-aaRSs_OBF_like superfamily Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with... - 93.416 1.11E-22 7 - 102 superfamily 263924
rpa1 replication factor-a protein 1 (rpa1); All proteins in this family for which functions are known... - 464.974 2.81E-156 2 - 588 multi-dom 233055

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14457 PHATRDRAFT_14457 211019 287183 469065 Cre17.g718850.t1.1 AT2G06510.1 556228

KEGG

KEGG description KEGG Pathway
Homologous recombination map03440

GO Terms

GO:0003676 GO:0003677 GO:0005634 GO:0006260 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

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