PHATRDRAFT_15468 (PAS_9)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_15468	chr_19	(PAS_9)	202061	202420	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0079

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0045	0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	52.2503	5.17E-10	19 - 120	superfamily	238075
PAS superfamily		PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising...	-	52.2503	5.17E-10	19 - 120	superfamily	238075
PAS_9		PAS domain; PAS domain.	-	91.6759	1.00E-24	17 - 118	multi-dom	257751

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
33407		Not available	155070	164722	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments