PHATRDRAFT_21983 prp4 pre-mrna processing factor 4 homolog (WD40)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21983 chr_15 prp4 pre-mrna processing factor 4 homolog (WD40) 300551 302062 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0382

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 184.461 5.97E-54 199 - 484 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 184.461 5.97E-54 199 - 484 superfamily 238121
PRP4 pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins.... cl02632 50.05 3.01E-08 53 - 82 specific 255044
PRP4 superfamily pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins.... - 50.05 3.01E-08 53 - 82 superfamily 261383
COG2319 FOG: WD40 repeat [General function prediction only] - 149.854 8.35E-40 212 - 484 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
260891 Not available 208304 235790 108000 Cre16.g662800.t1.2 AT2G41500.1 314758

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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