PHATRDRAFT_30352 (Smc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_30352 chr_22 (Smc) 252385 256248 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0097

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0086
 0.15

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC2_euk ATP-binding cassette domain of eukaryotic SMC2 proteins; The structural maintenance of chromosomes... cl17201 314.236 4.21E-98 1 - 156 specific 213240
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 179.416 3.89E-50 1076 - 1170 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 179.416 3.89E-50 1076 - 1170 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This entry represents the hinge region of the SMC (Structural... cl05797 112.709 1.59E-28 523 - 642 specific 214944
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 112.709 1.59E-28 523 - 642 superfamily 262671
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 496.159 1.78E-154 1 - 1171 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1393 Not available 210755 191984 465321 Cre02.g086650.t1.2 AT5G62410.1 554108

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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