PHATRDRAFT_31725 (PIN_Nob1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_31725	chr_1	(PIN_Nob1)	777708	779691	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0201

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0237	0.20	120 170

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PIN_Nob1		PIN domain of eukaryotic ribosome assembly factor Nob1 and archaeal UPF0129 protein Ta0041-like...	cl14812	142.34	3.43E-40	37 - 129	specific	189046
PIN_SF superfamily		PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a...	-	142.34	3.43E-40	37 - 129	superfamily	265458
NOB1_Zn_bind superfamily		Nin one binding (NOB1) Zn-ribbon like; This domain corresponds to a zinc ribbon and is found on the...	-	82.2593	5.34E-19	527 - 607	superfamily	255030

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
7265		Not available	Not available	282185	202851	Cre01.g031750.t1.2	AT5G41190.1	314356

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments