PHATRDRAFT_33072 superkiller viralicidic activity 2-like 2 (DSHCT)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_33072 chr_2 superkiller viralicidic activity 2-like 2 (DSHCT) 1451461 1454903 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0049

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 83.5408 1.70E-18 22 - 155 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 83.5408 1.70E-18 22 - 155 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.796 7.50E-12 236 - 396 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 63.796 7.50E-12 236 - 396 superfamily 238034
DSHCT superfamily DSHCT (NUC185) domain; This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. - 225.558 2.35E-68 696 - 871 superfamily 254631
DSHCT superfamily DSHCT (NUC185) domain; This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. - 225.558 2.35E-68 696 - 871 superfamily 254631
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 103.726 7.76E-25 3 - 186 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
31145 Not available 156307 197417 Not available Not available AT3G46960.1 318253

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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