PHATRDRAFT_42123 ubiquitin protein ligase (HECTc)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42123	chr_13	ubiquitin protein ligase (HECTc)	248048	249079	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0124

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0050	0.33	0.032 2400

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HECTc		HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds...	cl00077	378.831	4.59E-130	1 - 341	specific	238033
HECTc superfamily		HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds...	-	378.831	4.59E-130	1 - 341	superfamily	260176
HECTc		Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2...	-	346.529	8.82E-118	2 - 340	multi-dom	214523

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
268040		Not available	181283	251020	73670	Cre03.g159200.t1.1	AT3G17205.2	564322

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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