Phatr_hclust_0124 Hierarchical Clustering
Phaeodactylum tricornutum

Cluster Plots

Cluster Plot Conditions Plot Dendrogram

GO Enrichment

GO ID Go Term p-value q-value Cluster
GO:0000226 microtubule cytoskeleton organization and biogenesis 0.0172156 1 Phatr_hclust_0124
GO:0006865 amino acid transport 0.0238392 1 Phatr_hclust_0124
GO:0006512 ubiquitin cycle 0.0420201 1 Phatr_hclust_0124
GO:0006304 DNA modification 0.0425004 1 Phatr_hclust_0124
GO:0006268 DNA unwinding 0.0425004 1 Phatr_hclust_0124
GO:0009073 aromatic amino acid family biosynthesis 0.0425004 1 Phatr_hclust_0124
GO:0006568 tryptophan metabolism 0.0507874 1 Phatr_hclust_0124
GO:0006821 chloride transport 0.0590046 1 Phatr_hclust_0124
GO:0009396 folic acid and derivative biosynthesis 0.0671528 1 Phatr_hclust_0124
GO:0006265 DNA topological change 0.0752324 1 Phatr_hclust_0124

Members

PHATRDRAFT_4413 : root border cell-specific protein (Pyrid_oxidase_2 superfamily)
PHATRDRAFT_42868 :
PHATRDRAFT_44333 : gamma-tubulin interacting protein (Spc97_Spc98)
PHATRDRAFT_47254 :
PHATRDRAFT_48186 : indole-3-glycerol-phosphate synthase (TIM_phosphate_binding superfamily)
PHATRDRAFT_47881 : af225976_1 flavoredoxin (Flavin_Reduct)
PHATRDRAFT_43515 : solute carrier family 29 (nucleoside transporters)memberisoform cra_b (Nucleoside_tran superfamily)
PHATRDRAFT_15627 : ubiquitin-protein ligase (HECTc)
PHATRDRAFT_48342 :
PHATRDRAFT_50146 : amino acid transporter (Aa_trans superfamily)
PHATRDRAFT_42424 : xenotropic and polytropic murine leukemia virus receptor xpr1 (EXS superfamily)
PHATRDRAFT_37133 :
PHATRDRAFT_43164 : short-chain dehydrogenase reductasesuperfamily protein (NADB_Rossmann superfamily)
PHATRDRAFT_13261 : at4g39970 t5j17_140 (PLN02779)
PHATRDRAFT_48772 :
PHATRDRAFT_43807 : (DUF819 superfamily)
PHATRDRAFT_46097 : chloride channel 7 (Voltage_gated_ClC superfamily)
PHATRDRAFT_44868 : leucine aminopeptidase (PRK00913)
PHATRDRAFT_32315 :
PHATRDRAFT_18197 : atp-bindingsub-family c (cftr mrp)member 1 (ABCC_MRP_domain2)
PHATRDRAFT_45803 :
PHATRDRAFT_24119 : chloroplast light harvesting protein isoform 5 (Chloroa_b-bind)
PHATRDRAFT_42606 : (SET)
PHATRDRAFT_42123 : ubiquitin protein ligase (HECTc)
PHATRDRAFT_18323 : inositol-phosphate phosphatase (IMPase)
PHATRDRAFT_43280 : solute carrier familymember 1 (Aa_trans superfamily)
PHATRDRAFT_43277 : chorismate mutase (PLN02344)
PHATRDRAFT_32314 : short-chain dehydrogenase reductase sdr (NADB_Rossmann superfamily)
PHATRDRAFT_23557 : cation-efflux transporter (CzcD)
PHATRDRAFT_12732 : adenylate kinase cytosolic (adk)
PHATRDRAFT_38927 : ribosomal protein l11 methyltransferase
PHATRDRAFT_47117 : (Gly_transf_sug superfamily)
PHATRDRAFT_45572 : ero1-like beta (ERO1 superfamily)
PHATRDRAFT_33099 :
PHATRDRAFT_46939 : protection of telomeres 1(pot1-like telomere end-binding protein) (RPA_2b-aaRSs_OBF_like superfamily)
PHATRDRAFT_9115 : mgc116538 protein (AdoMet_MTases superfamily)
PHATRDRAFT_33037 : (Methyltransf_28)
PHATRDRAFT_18945 : at4g27720 t29a15_210 (MFS_1)
PHATRDRAFT_43861 :
PHATRDRAFT_15239 : otuubiquitin aldehyde binding 1 (Peptidase_C65)
PHATRDRAFT_51271 : constans interacting protein 3 (FKBP_C)
PHATRDRAFT_36077 : (Ten1_2 superfamily)
PHATRDRAFT_42749 : component of oligomeric golgi complex 5 isoform 3
PHATRDRAFT_44738 : transmembrane emp24 domain-containing protein 9 precursor (EMP24_GP25L)
PHATRDRAFT_12107 : dihydropterin pyrophosphokinase dihydropteroate synthase (DHPS)
PHATRDRAFT_43317 : (DUF2088 superfamily)
PHATRDRAFT_47112 :
PHATRDRAFT_43435 : cog0457: fog: tpr repeat (COG4976)
PHATRDRAFT_49241 :
PHATRDRAFT_48187 : protein familywith a coiled coil-4 domain (Methyltransf_22)
PHATRDRAFT_15125 : gdp-4-keto-6-deoxy-d-mannose epimerase-reductase (PLN02725)
PHATRDRAFT_18335 : insulin-degrading enzyme (Ptr)
PHATRDRAFT_33921 : (DUF4281)
PHATRDRAFT_44905 : dolichyl glycosyltransferase (Alg6_Alg8 superfamily)
PHATRDRAFT_43174 : gdp-fucose transporter (VRG4)
PHATRDRAFT_44222 : enhanced disease susceptibility 5 (MATE_like superfamily)
PHATRDRAFT_17086 : phosphoglycerate mutase 1 family (HP_PGM_like)
PHATRDRAFT_9625 : presenilin family protein (Peptidase_A22B superfamily)
PHATRDRAFT_13157 : small gtp-binding protein domain containing protein (Ras_like_GTPase superfamily)
PHATRDRAFT_48661 :
PHATRDRAFT_35643 : ornithine cyclodeaminase (PRK06199 superfamily)
PHATRDRAFT_34460 :
PHATRDRAFT_44480 : mgc82690 protein (MFS)
PHATRDRAFT_8810 : topoisomeraseiii beta (TopA)

Conditions

Condition Condition Difference FDR
Re-illuminated_6h Re-illuminated_6h 0.328 0.0070922
Copper_SH Copper_SH 0.173 0.00748503
Green_vs_Red_24h Green_vs_Red_24h -0.004 0.97885
Silver_SH Silver_SH 0.123 0.045614
Cadmium_1.2mg Cadmium_1.2mg -0.048 0.27512
BlueLight_24h BlueLight_24h -0.085 0.725497
GreenLight_0.5h GreenLight_0.5h -2.321 0.000458716
RedLight_6h RedLight_6h 0.170 0.213346
light_16hr_dark_7.5hr light_16hr_dark_7.5hr 0.000 0.980594
GreenLight_24h GreenLight_24h -0.157 0.102899
light_6hr light_6hr -0.046 0.778018
dark_8hr_light_3hr dark_8hr_light_3hr 0.022 0.894518
Blue_vs_Green_6h Blue_vs_Green_6h -0.092 0.097
Ammonia_SH Ammonia_SH -1.159 0.000344828
Simazine_SH Simazine_SH -0.238 0.000423729
Oil_SH Oil_SH 0.035 0.585337
Salinity_15ppt_SH Salinity_15ppt_SH 0.132 0.0811765
Cadmium_SH Cadmium_SH -0.246 0.00217391
Blue_vs_Red_24h Blue_vs_Red_24h 0.067 0.514773
highlight_0to6h highlight_0to6h -0.027 0.93125
BlueLight_0.5h BlueLight_0.5h -3.104 0.000462963
Dispersant_SH Dispersant_SH 0.000 0.999799
light_16hr_dark_4hr light_16hr_dark_4hr 0.191 0.00833333
light_15.5hr light_15.5hr 0.385 0.00436893
light_10.5hr light_10.5hr -0.020 0.909708
Dispersed_oil_SH Dispersed_oil_SH 0.062 0.3956
Si_free Si_free -0.053 0.512452
Re-illuminated_0.5h Re-illuminated_0.5h -3.030 0.000396825
Mixture_SH Mixture_SH -1.255 0.000357143
Blue_vs_Red_6h Blue_vs_Red_6h -0.006 0.985113
light_16hr_dark_30min light_16hr_dark_30min 0.467 0.000735294
BlueLight_6h BlueLight_6h 0.164 0.094375
highlight_12to48h highlight_12to48h 0.293 0.00634328
RedLight_24h RedLight_24h -0.153 0.120924
Dark_treated Dark_treated -2.262 0.000446429
GreenLight_6h GreenLight_6h 0.256 0.0127219
Cadmium_0.12mg Cadmium_0.12mg 0.023 0.376744
Blue_vs_Green_24h Blue_vs_Green_24h 0.072 0.0975248
RedLight_0.5h RedLight_0.5h -1.756 0.000555556
Green_vs_Red_6h Green_vs_Red_6h 0.086 0.547899
Re-illuminated_24h Re-illuminated_24h 0.103 0.295608

Motifs

MEME Output