PHATRDRAFT_43574 transducin family protein wd-40 repeat family protein (WD40 superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_43574	chr_2	transducin family protein wd-40 repeat family protein (WD40 superfamily)	850103	851602	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0200

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0237	0.20	120 170

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	109.732	4.37E-27	195 - 494	superfamily	238121
NLE superfamily		NLE (NUC135) domain; This domain is located N terminal to WD40 repeats. It is found in the...	-	45.2058	2.45E-06	41 - 111	superfamily	254635
NLE superfamily		NLE (NUC135) domain; This domain is located N terminal to WD40 repeats. It is found in the...	-	45.2058	2.45E-06	41 - 111	superfamily	254635
COG2319		FOG: WD40 repeat [General function prediction only]	-	80.5179	1.77E-16	156 - 480	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
22985		Not available	240159	286493	62524	Cre17.g710100.t1.1	AT5G15550.1	563571

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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