PHATRDRAFT_46259 rna-dependent helicase (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46259 chr_9 rna-dependent helicase (DEADc) 742827 744596 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0201

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0215
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 267.043 1.71E-85 100 - 308 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 267.043 1.71E-85 100 - 308 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 106.553 4.31E-27 322 - 451 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 106.553 4.31E-27 322 - 451 superfamily 238034
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 81.3064 7.16E-19 482 - 544 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 81.3064 7.16E-19 482 - 544 superfamily 258212
PRK01297 ATP-dependent RNA helicase RhlB; Provisional - 196.672 8.65E-56 24 - 460 multi-dom 234938

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39953 Not available 225661 192208 418435 Cre07.g314900.t1.1 AT5G65900.1 538218

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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