PHATRDRAFT_47417 dna topoisomerase family protein (TopA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47417 chr_13 dna topoisomerase family protein (TopA) 576027 579128 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0055

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0173
 0.27

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 378.101 2.81E-121 227 - 673 superfamily 238110
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 378.101 2.81E-121 227 - 673 superfamily 238110
TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA... cl00718 128.12 1.19E-33 43 - 220 specific 173782
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 128.12 1.19E-33 43 - 220 superfamily 260587
zf-CCHC Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... cl15298 36.2781 0.00428069 992 - 1008 specific 189387
zf-CCHC superfamily Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... - 36.2781 0.00428069 992 - 1008 superfamily 199156
TopA Topoisomerase IA [DNA replication, recombination, and repair] - 423.942 5.09E-136 43 - 683 multi-dom 223624

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33625 Not available 247872 323958 Not available Not available AT5G63920.1 470148

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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