33625 (top3a) TopA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33625 chr_4 (top3a) TopA 1580581 1583628 + TopA

Synonyms

NCBI ID Ensembl Genomes exon ID
7451898 Thaps33625.1, Thaps33625.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0192

Most Highly Correlated Transcripts

8003

PIG-L
0.9192

23130

NT_PAP_TUTase
0.9133

7601

hypothetical protein
0.9073

261357

NAD_binding_8 superfamily
0.9072

2587

O-FucT_like
0.9059

31298

S_TKc
0.9051

32503

LETM1 superfamily
0.9038

37336

Beach
0.899

4842

Cas1_AcylT superfamily
0.8965

3331

Bac_rhamnosid superfamily
0.896

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 388.501 2.67E-125 187 - 619 superfamily 238110
TOP1Ac superfamily DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA... - 388.501 2.67E-125 187 - 619 superfamily 238110
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 104.238 2.04E-25 6 - 182 superfamily 260587
TopA Topoisomerase IA [DNA replication, recombination, and repair] - 420.09 9.54E-135 9 - 608 multi-dom 223624

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47417 PHATRDRAFT_47417 247872 323958 74124 Cre17.g725100.t1.2 AT5G63920.1 470148

KEGG

KEGG description KEGG Pathway
Homologous recombination map03440

GO Terms

GO:0003677 GO:0003917 GO:0006265 GO:0006268 GO:0003916 GO:0003676 GO:0006304 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003917

DNA topoisomerase type I activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
GO Category: 
MF

GO:0006265

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

GO:0006268

DNA unwinding involved in DNA replication

Details: 
The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication.
GO Category: 
BP

GO:0003916

DNA topoisomerase activity

Details: 
Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0006304

DNA modification

Details: 
The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties.
GO Category: 
BP

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