PHATRDRAFT_47879 (SH2_2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47879 chr_15 (SH2_2) 317737 323758 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0149
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SH2_Nterm_SPT6_like N-terminal Src homology 2 (SH2) domain found in Spt6; N-terminal SH2 domain in Spt6. Spt6 is an... cl15255 83.8262 1.22E-18 1643 - 1730 specific 198174
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 83.8137 1.27E-18 1740 - 1826 superfamily 265655
SH2_Cterm_SPT6_like C-terminal Src homology 2 (SH2) domain found in Spt6; Spt6 is an essential transcription elongation... cl15255 83.8137 1.27E-18 1740 - 1826 specific 198182
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 83.8137 1.27E-18 1740 - 1826 superfamily 265655
S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... cl09927 48.5307 1.15E-06 1500 - 1564 specific 238094
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 48.5307 1.15E-06 1500 - 1564 superfamily 263921
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 80.2686 3.04E-17 1227 - 1328 superfamily 267419
DLD superfamily Death-like domain of SPT6; This DLD domain maintains the characteristic overall topology of death... - 55.7052 8.88E-09 1342 - 1493 superfamily 259015
UPF0081 superfamily Uncharacterized protein family (UPF0081); Uncharacterized protein family (UPF0081). - 54.4876 2.50E-08 1038 - 1210 superfamily 266606
HTH_44 superfamily Helix-turn-helix DNA-binding domain of SPT6; This helix-turn-helix represents the first of two DNA-... - 48.7039 1.48E-06 407 - 482 superfamily 258779

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269534 Not available 209780 319659 Not available Cre09.g403182.t1.1 AT1G65440.1 349766

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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