PHATRDRAFT_49146 -like family protein zinc finger (ccch-type) family protein (CwfJ_C_1 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49146 chr_21 -like family protein zinc finger (ccch-type) family protein (CwfJ_C_1 superfamily) 56294 58864 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0160
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 39.9809 0.000298591 369 - 447 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 39.9809 0.000298591 369 - 447 superfamily 266524
CwfJ_C_1 superfamily Protein similar to CwfJ C-terminus 1; This region is found in the N terminus of Schizosaccharomyces... - 101.295 8.60E-25 638 - 743 superfamily 252738
CwfJ_C_2 superfamily Protein similar to CwfJ C-terminus 2; This region is found in the N terminus of Schizosaccharomyces... - 71.1486 1.18E-14 780 - 853 superfamily 252737
MPP_superfamily superfamily metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known... - 53.8422 1.46E-08 12 - 250 superfamily 265413

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
23218 Not available 268177 288983 Not available Cre07.g338900.t1.1 AT5G56900.1 528823

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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