PHATRDRAFT_49362 high mobility group protein homolog tdp- (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49362 chr_22 high mobility group protein homolog tdp- (HMGB-UBF_HMG-box) 37474 38565 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0425

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0032
 0.44

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 61.1045 3.83E-12 116 - 194 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 41.8356 2.07E-05 206 - 262 superfamily 260179
HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... cl00082 41.8356 2.07E-05 206 - 262 specific 238037
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 41.8356 2.07E-05 206 - 262 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
6771 Not available 164999 149874 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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