6771 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6771 chr_7 HMGB-UBF_HMG-box 464603 466012 + HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7446217 Thaps6771.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0169

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0034
 0.54

Most Highly Correlated Transcripts

261357

NAD_binding_8 superfamily
0.8858

bd1069

(bd1069) NA
0.8858

31599

MoCF_BD superfamily
0.8627

22359

hypothetical protein
0.8468

8003

PIG-L
0.8457

12076

EPL1 superfamily
0.8433

14374

Glycos_transf_1 superfamily
0.843

263716

protein with peroxisomal targeting peptide
0.8401

37621

Ptr
0.8392

4556

hypothetical protein
0.838

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 59.1785 2.99E-11 146 - 223 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 59.1785 2.99E-11 146 - 223 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49362 PHATRDRAFT_49362 164999 149874 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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