PHATRDRAFT_50387 sjchgc04996 protein (GRASP55_65 superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_50387	chr_29	sjchgc04996 protein (GRASP55_65 superfamily)	196445	197709	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0218

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0169	0.42	430 6300

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GRASP55_65 superfamily		GRASP55/65 PDZ-like domain; GRASP55 (Golgi re-assembly stacking protein of 55 kDa) and GRASP65 (a...	-	79.6049	4.85E-18	18 - 121	superfamily	252630
GRASP55_65 superfamily		GRASP55/65 PDZ-like domain; GRASP55 (Golgi re-assembly stacking protein of 55 kDa) and GRASP65 (a...	-	79.6049	4.85E-18	18 - 121	superfamily	252630

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
7103		Not available	196299	100892	208114	Not available	Not available	485203

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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