PHATRDRAFT_9235 rpa2_schpo probable dna-directed rna polymerase i subunit rpa2 (dna-directed rna polymerase i polypeptide 2) (rna polymerase i subunit 2) (RpoB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_9235 chr_1 rpa2_schpo probable dna-directed rna polymerase i subunit rpa2 (dna-directed rna polymerase i... 1843347 1847100 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0124
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 891.535 0 6 - 1144 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 891.535 0 6 - 1144 superfamily 238353
RNA_pol_Rpa2_4 superfamily RNA polymerase I, Rpa2 specific domain; This domain is found between domain 3 (pfam04565) and... - 77.6117 4.98E-17 560 - 618 superfamily 253961
RNA_pol_Rpa2_4 superfamily RNA polymerase I, Rpa2 specific domain; This domain is found between domain 3 (pfam04565) and... - 77.6117 4.98E-17 560 - 618 superfamily 253961
RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] - 683.916 0 6 - 1144 multi-dom 223163

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
36845 Not available 203725 247173 67355 Cre07.g322176.t1.1 AT1G29940.1 538440

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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