36845 (RPA2_1) RpoB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36845 chr_12 (RPA2_1) RpoB 439836 443987 + RpoB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

4038

hypothetical protein
0.8974

24429

PRMT5 superfamily
0.8926

260923

BcrAD_BadFG superfamily
0.8917

31516

SIK1
0.8863

268130

hypothetical protein
0.881

20985

COG5593
0.8805

2157

D123 superfamily
0.8783

40529

COG2319
0.8751

33425

BMS1
0.8733

22685

COG2520
0.8699

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 888.839 0 37 - 1223 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 888.839 0 37 - 1223 superfamily 238353
RNA_pol_Rpa2_4 superfamily RNA polymerase I, Rpa2 specific domain; This domain is found between domain 3 (pfam04565) and... - 69.5225 3.77E-14 625 - 683 superfamily 253961
RNA_pol_Rpa2_4 superfamily RNA polymerase I, Rpa2 specific domain; This domain is found between domain 3 (pfam04565) and... - 69.5225 3.77E-14 625 - 683 superfamily 253961
RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription] - 681.99 0 26 - 1225 multi-dom 223163

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9235 PHATRDRAFT_9235 203725 247173 67355 Cre07.g322176.t1.1 AT1G29940.1 538440

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0005634 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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