PHATRDRAFT_9806 u1 snrnp 70k protein (RRM_snRNP70)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_9806 chr_2 u1 snrnp 70k protein (RRM_snRNP70) 1427200 1427784 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0240

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_snRNP70 RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins;... cl17169 158.564 8.20E-50 97 - 184 specific 240682
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 158.564 8.20E-50 97 - 184 superfamily 266524
U1snRNP70_N superfamily U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; This domain is found in eukaryotes. This... - 60.7396 1.06E-12 4 - 80 superfamily 256905
U1snRNP70_N superfamily U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; This domain is found in eukaryotes. This... - 60.7396 1.06E-12 4 - 80 superfamily 256905
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 80.3762 1.71E-18 65 - 177 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263124 Not available 161866 155318 Not available Cre16.g656250.t1.1 AT3G50670.1 285141

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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