263124 RRM_snRNP70
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263124 chr_7 RRM_snRNP70 647898 648791 + RRM_snRNP70

Synonyms

NCBI ID Ensembl Genomes exon ID
7449187 Thaps263124.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0427

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0248
 0.34

Most Highly Correlated Transcripts

38047

RCC1
0.8804

33092

RINGv superfamily
0.8614

17468

CK_II_beta
0.8428

263599

COG3899
0.8351

19743

Sm_D3
0.8328

263610

COG3899
0.831

39955

ARM
0.8301

261491

Melibiase superfamily
0.8194

263554

SK
0.8173

261357

NAD_binding_8 superfamily
0.816

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_snRNP70 RNA recognition motif in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins;... cl17169 174.357 1.38E-54 199 - 289 specific 240682
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 174.357 1.38E-54 199 - 289 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 77.6798 7.50E-17 198 - 283 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9806 PHATRDRAFT_9806 161866 155318 Not available Cre16.g656250.t1.1 AT3G50670.1 285141

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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