PHATRDRAFT_9989 dead (asp-glu-ala-asp) box polypeptide 55 (SrmB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_9989 chr_2 dead (asp-glu-ala-asp) box polypeptide 55 (SrmB) 901775 904035 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0201

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0215
 0.22

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 108.864 8.40E-28 255 - 399 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 108.864 8.40E-28 255 - 399 superfamily 238034
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 171.514 2.20E-49 1 - 196 superfamily 266587
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 98.6404 7.53E-25 430 - 493 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 98.6404 7.53E-25 430 - 493 superfamily 258212
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 258.182 9.25E-78 1 - 405 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34027 Not available 209044 237110 41278 Not available AT5G05450.1 309392

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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