14225 DEADc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14225 chr_22 DEADc 71714 74124 - DEADc

Synonyms

NCBI ID Ensembl Genomes exon ID
7443667 Thaps14225.1, Thaps14225.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0335

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

22764

hypothetical protein
0.7595

21088

hypothetical protein
0.7368

25267

hypothetical protein
0.7305

bd453

(bd453) Mito_carr
0.7263

262616

(MYB22)
0.7182

3436

SLAC1
0.7157

262956

WASH-7_mid
0.7116

23094

hypothetical protein
0.7097

bd1851

(bd1851) NA
0.7068

269314

SMK-1 superfamily
0.7055

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 233.916 1.55E-71 308 - 510 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 233.916 1.55E-71 308 - 510 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.798 5.91E-30 521 - 665 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.798 5.91E-30 521 - 665 superfamily 238034
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 166.513 2.84E-47 316 - 524 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14983 PHATRDRAFT_14983 202269 Not available Not available Not available Not available 300617

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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