15976 PTZ00348
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15976 chr_2 PTZ00348 28539 30731 + PTZ00348

Synonyms

NCBI ID Ensembl Genomes exon ID
7445069 Thaps15976.2, Thaps15976.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0254
 0.29

Most Highly Correlated Transcripts

11434

hypothetical protein
0.9129

26403

PLN03233
0.9102

35929

(MAPKKK) S_TKc
0.9

42543

2OG-FeII_Oxy_2
0.8819

34533

AAA_11
0.8761

7771

hypothetical protein
0.8751

39812

Sun
0.8698

17271

FtsJ
0.8691

263363

ANK
0.8686

33699

TRX_family
0.8681

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 86.4578 1.31E-18 421 - 682 superfamily 260139
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 86.4578 1.31E-18 421 - 682 superfamily 260139
PTZ00348 tyrosyl-tRNA synthetase; Provisional - 577.624 0 1 - 679 multi-dom 173541

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11722 PHATRDRAFT_11722 177077 14491 68570 Cre03.g145727.t1.1 AT2G33840.1 344643

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004831 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004831

tyrosine-tRNA ligase activity

Details: 
Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+).
GO Category: 
MF

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