34533 AAA_11Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34533	chr_5	AAA_11	2122261	2123895	+	AAA_11

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442294	Thaps34533.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

35929 (MAPKKK) S_TKc 0.9134	14109 SrmB 0.907	42543 2OG-FeII_Oxy_2 0.9007	39812 Sun 0.9	25309 ABC_ATPase 0.8958	19360 HELICc 0.8938
262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.8904	34710 SNF2_N 0.8901	26403 PLN03233 0.8854	261777 MIF4G 0.8846

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	188.526	3.96E-56	371 - 544	superfamily	257490
AAA_12 superfamily		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	188.526	3.96E-56	371 - 544	superfamily	257490
AAA_11		AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	-	188.604	2.19E-56	171 - 364	multi-dom	257489

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	257395	196966	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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