16695 Ist1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
16695	chr_19b_31	Ist1	84738	85794	+	Ist1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451801	Thaps16695.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0006

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0242	0.38	6400 20000

Most Highly Correlated Transcripts

bd409 (bd409) Snf7 superfamily 0.8996	bd1835 (bd1835) NA 0.8772	bd1840 (bd1840) NA 0.8596	6066 APG6 0.8584	34850 lon 0.8494	21677 hypothetical protein 0.8439
25019 hypothetical protein 0.8391	6140 hypothetical protein 0.839	30178 PLN03050 0.8382	11503 hypothetical protein 0.8338

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ist1 superfamily		Regulator of Vps4 activity in the MVB pathway; ESCRT-I, -II, and -III are endosomal sorting...	-	205.079	8.69E-65	15 - 180	superfamily	251922
Ist1 superfamily		Regulator of Vps4 activity in the MVB pathway; ESCRT-I, -II, and -III are endosomal sorting...	-	205.079	8.69E-65	15 - 180	superfamily	251922

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11271	PHATRDRAFT_11271	220511	236594	363691	Cre10.g435400.t1.2	AT1G34220.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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