30178 PLN03050Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30178	chr_16a	PLN03050	99642	101120	-	PLN03050

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449970	Thaps30178.1, Thaps30178.2, Thaps30178.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0006

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0283	0.35	15 620

Most Highly Correlated Transcripts

5967 hypothetical protein 0.8674	bd1841 (bd1841) CAP10 superfamily 0.8543	269541 M20_Acy1 0.8468	268242 hypothetical protein 0.8443	21677 hypothetical protein 0.8387	16695 Ist1 0.8382
25171 DUF1517 superfamily 0.8318	6605 hypothetical protein 0.8296	6066 APG6 0.8287	1855 hypothetical protein 0.8274

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN03050		pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional	cl00318	444.319	5.50E-159	1 - 250	specific	215551
YjeF_N superfamily		YjeF-related protein N-terminus; YjeF-N domain is a novel version of the Rossmann fold with a set...	-	444.319	5.50E-159	1 - 250	superfamily	260350

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5762	PHATRDRAFT_5762	180008	294578	62516	Cre08.g378200.t1.2	AT5G49970.1	481040

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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