17654 REX4_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17654 chr_22 REX4_like 505549 506649 - REX4_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7443888 Thaps17654.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0268
 0.24

Most Highly Correlated Transcripts

32395

RNA_pol
0.8859

38662

BING4CT
0.8848

2392

hypothetical protein
0.8843

39540

Alpha_ANH_like_II
0.8843

264345

SpoU
0.8833

bd1807

(bd1807) RRS1 superfamily
0.8831

4372

hypothetical protein
0.8799

24439

hypothetical protein
0.873

8541

PRK00142
0.8725

19623

RRM3_MEI2_like
0.8696

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated... cl10012 232.021 2.93E-75 180 - 342 specific 99847
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 232.021 2.93E-75 180 - 342 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13309 PHATR_13309 198715 198625 Not available Cre11.g480060.t1.2 AT3G15080.1 489818

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004527 GO:0005622 GO:0008859 -

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0008859

exoribonuclease II activity

Details: 
Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction.
GO Category: 
MF

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